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Publications

Publications of the scholarship holders

  • Adankwah E, Lundtoft C, Güler A, Franken KLMC, Ottenhoff THM, Mayatepek E, Owusu-Dabo E, Philips RO, Nausch N and Jacoben M. Two-Hit in-vitro T-cell stimulation Detects Mycobacterium tuberculosis Infection in Quantiferon Negative Tuberculosis Patients and Healthy Contacts from Ghana. Frontiers in Immunology, 2019, 10:1518
  • Harling K, Adankwah E, Güler A, Afum-Adjei Awuah A, Adu-Amoah L, Mayatepek E, Owusu-Dabo E , Nausch N, Jacobsen M. Constitutive STAT3 phosphorylation and IL-6/IL-10 co-expression characterize impaired T-cell functions in tuberculosis patients.Cellular and Molecular Immunology, 2018, 14, 1-13. 
  • Lundtoft C, Afum-Adjei Awuah A, Rimpler J, Harling K, Nausch N, Kohns M, Adankwah E, Lang F, Olbrich L, Mayatepek E, Owusu-Dabo E, Jacobsen M Aberrant plasma IL-7 and soluble IL-7 receptor levels indicate impaired T-cell response to IL-7 in human tuberculosis. PLoS Pathog 2017, 13(6): e1006425.
  • Adankwah, E., Guler, A., Mayatepek, E., Phillips, R.O., Nausch, N, & Jacobsen, M. CD27 expression of T-cells discriminates IGRA-negative TB patients from healthy contacts in Ghana. Microbes & Infection 2020;22(1): 65-68
  • Güler, A., Lopez Venegas, M., Adankwah, E., Mayatepek, E., Nausch, N. & Jacobsen, M. Suppressor of cytokine signalling 3 is crucial for interleukin‐7 receptor re‐expression after T‐cell activation and interleukin‐7 dependent proliferation. European Journal of Immunology. 2020;50(2):234-244
  • Kovacic F, Babic N, Krauss U, Jaeger KE. (2019)Classification of Lipolytic Enzymes from Bacteria. In: F. Rojo (ed.), Aerobic Utilization of Hydrocarbons, Oils and Lipids, Handbook of Hydrocarbon and Lipid Microbiology, Springer International Publishing, pp. 255-289
  • Bücher KS, Babic N, Freichel T, Kovacic F, Hartmann L. Monodisperse Sequence‐Controlled α‐l‐Fucosylated Glycooligomers and Their Multivalent Inhibitory Effects on LecB Macromolecular bioscience 2018, 18(12): 1800337
  • Kamariza M, Shieh P, Ealand CS, Peters JS, Chu B, Rodriguez-Rivera FP, Babu Sait MR, Treuren WV, Martinson N, Kalscheuer R, Kana BD, Bertozzi CR. Rapid detection of Mycobacterium tuberculosis in sputum with a solvatochromic trehalose probe. Sci Transl Med. 2018 Feb 28;10(430)
  • Oliver Schanz, Rieka Chijiiwa, Sevgi Can Cengiz, Yasmin Majlesain, Heike Weighardt, Haruko Takeyama, and Irmgard Förster. 2020. “Dietary AHR Ligands Regulate Ahrr Expression in Intestinal Immune Cells and Intestinal Microbiota Composition.” International Journal of Molecular Sciences 
  • Dobner J, Ress C, Rufinatscha K, Salzmann K, Salvenmoser W, Folie S, Wieser V, Moser P, Weiss G, Goebel G, Tilg H, Kaser S. Fat-enriched rather than high-fructose diets promote whitening of adipose tissue in a sex-dependent manner. J Nutr Biochem. 2017 Nov;49:22-29. doi: 10.1016/j.jnutbio.2017.07.009. Epub 2017 Jul 24.
  • Dobner J, Kaser S. Body mass index and the risk of infection - from underweight to obesity. Clin Microbiol Infect. 2018;24(1):24-8. 
  • Dobner, J.; Simons, I.M.; Rufinatscha, K.; Hänsch, S.; Schwarten, M.; Weiergräber, O.H.; Abdollahzadeh, I.; Gensch, T.; Bode, J.G.; Hoffmann, S.; Willbold, D. Deficiency of GABARAP but not its Paralogs Causes Enhanced EGF-induced EGFR Degradation. Cells 2020, 9, 1296.
  • Simons IM, Mohrlüder J, Feederle R, Kremmer E, Zobel T, Dobner J, et al. The highly GABARAP specific rat monoclonal antibody 8H5 visualizes GABARAP in immunofluorescence imaging at endogenous levels.Sci Rep. 2019;9(1):526.
  • Oberleitner L, Ehret G, Nowack E. Mikrobielle Symbiosen und die Evolution neuer Organellen. Biospektrum 2019, 25: 268
  • Kanonenberg K, Spitz O, Erenburg IN, Beer T and Schmitt L. Type I secretion system-it takes three and a substrate. FEMS Microbiol Lett 2018 365(11).
  • Spitz O, Erenburg IN, Beer T, Kanonenberg K, Holland IB, Schmitt L. Type I Secretion Systems-One Mechanism for All? microbiolspec 2019, 7(2)
  • Ali S, Mann-Nüttel R, Schulze A, Richter L, Alferink J, Scheu S. Sources of Type I Interferons in Infectious Immunity: Plasmacytoid Dendritic Cells Not Always in the Driver’s Seat. Front Immunol 2019, April 10:77 
  • Scheu S, Ali S, Mann-Nüttel R, Richter L, Arolt V, Dannlowski U, Kuhlmann T, Klotz L, Alferink. Interferon β-Mediated Protective Functions of Microglia in Central Nervous System Autoimmunity. Int. J. Mol. Sci. 2019, 20(1), 190
  • Smirnov A, Pohlmann S, Nehring M, Ali S, Mann-Nüttel R, Scheu S, Antoni A, Hansen W, Büettner M, Gardiasch M, Westendorf A, Wirsdörfer Fl, Pastille E, Dudda M, Flohé S. Sphingosine 1-Phosphate- and C-C Chemokine Receptor 2-Dependent Activation of CD4+ Plasmacytoid Dendritic Cells in the Bone Marrow Contributes to Signs of Sepsis-Induced Immunosuppression. Front. Immunol., 23 November 2017
  •  Ptok J*, Müller L*, Theiss S, Schaal H. Context matters: Regulation of splice donor usage. Biochim Biophys Acta Gene Regul Mech. 2019. *Shared first authors
  • Hillebrand F, Ostermann PN, Müller L, Degrandi D, Erkelenz S, Widera M, Pfeffer K, Schaal H.
  • Gymnotic Delivery of LNA Mixmers Targeting Viral SREs Induces HIV-1 mRNA Degradation International journal of molecular sciences. 2019, 20(5).
  • Erkelenz S, Theiss S, Kaisers W, Ptok J, Walotka L, Müller L, Hillebrand F, Brillen AL, Sladek M and Schaal H. Ranking noncanonical 5' splice site usage by genome-wide RNA-seq analysis and splicing reporter assays. Genome research 2018, 28(12):1826-1840
  • Brillen AL, Schoneweis K, Walotka L, Hartmann L, Müller L, Ptok J, Kaisers W, Poschmann G, Stühler K, Buratti E, Theiss S and Schaal H. Succession of splicing regulatory elements determines cryptic 5ss functionality. Nucleic acids research 2017, 45(7):4202-16.
  • Brillen AL, Walotka L, Hillebrand F, Müller L, Widera M, Theiss S and Schaal H.
  • Analysis of Competing HIV-1 Splice Donor Sites Uncovers a Tight Cluster of Splicing Regulatory Elements within Exon 2/2b. Journal of virology 2017, 91(14): e00389-17
  • Rufinatscha K, Radlinger B, Dobner J, Folie S, Bon C, Profanter E, Ress C, Salzmann K, Staudacher G, Tilg H, Kaser S. Dipeptidyl peptidase-4 impairs insulin signaling and promotes lipid accumulation in hepatocytes. Biochem Biophys Res Commun. 2017 Apr 1;485(2):366-271. doi:10.1016/j.bbrc.2017.02.071. Epub 2017 Feb 16 
  • Gröpper C*, Rufinatscha K*, Schröder N*, Stindt S, Ehlting C, Albrecht U, Bock HH, Bartenschlager R, Häussinger D, Bode JG (*shared first authors) HCV modifies EGF signalling and upregulates production of CXCR2 ligands: Role in inflammation and antiviral immune response. J Hepatol. 2018 Sep;69(3):594-602. doi: 10.1016/j.jhep.2018.04.005. Epub 2018 Apr 27.
  • Rufinatscha K, Ress C, Folie S, Haas S, Salzmann K, Moser P, Dobner J, Weiss g, Iruzubieta P, Arias-Loste MT, Crespo J, Tilg H, Kaser S. Metabolic effects of reduced growth hormone action in fatty liver disease. Hepatol Int. 2018 Sep;12(5):474-481. doi: 10.1007/s12072-018-9893-7. Epub 2018 Sep 11.
  • Ress C, Paulweber M, Goebel G, Wileit K, Rufinatscha K, Strobl A, Salzmann K, Kedenko L, Tschoner A, Staudacher G, Iglseder B, Tilg H, Paulweber B, Kaser S. Circulating Wnt inhibitory factor 1 levels are associated with development of cardiovascular disease. Atherosclerosis. 2018 Jun;273:1-7. doi: 10.1016/j.atherosclerosis.2018.03.045. Epub 2018
  • Behnke K, Zhuang Y, Xu HC, Sundaram B, Reich M, Shinde PV, Huang J, Modares NF, Tumanov AV, Polz R, Scheller J, Ware CF, Pfeffer K, Keitel V, Häussinger D, Pandyra AA, Lang KS, Lang PA. Response to: Characterization of CD169+ macrophages in liver regeneration: tissue distribution and fate? Hepatology, 2019 Mar 4.
  • Behnke K, Zhuang Y, Xu HC, Sundaram B, Reich M, Shinde PV, Huang J, Modares NF, Tumanov AV, Polz R, Scheller J, Ware CF, Pfeffer K, Keitel V, Häussinger D, Pandyra AA, Lang KS, Lang PA. B Cell-Mediated Maintenance of Cluster of Differentiation 169-Positive Cells Is Critical for Liver Regeneration. Hepatology, 2018 Dec;68(6):2348-2361.
  • Lang E, Pozdeev VI, Shinde PV, Xu HC, Sundaram B, Zhuang Y, Poschmann G, Huang J, Stühler K, Pandyra AA, Keitel V, Häussinger D, Lang KS, Lang PA. Cholestasis induced liver pathology results in dysfunctional immune responses after arenavirus infection. Sci Rep. 2018 Aug 15;8(1):12179.
  • Sundaram B, Behnke K, Belancic A, Al-Salihi M, Thabet Y, Polz R, Pellegrino R, Zhuang Y, Shinde PV, Xu HC, Vasilevska J, Longerich T, Herebian D, Mayatepek E, Bock H, May P, Kordes C, Mak TW, Keitel V, Häussinger D, Scheller J, Pandyra AA, Lang KS, and Lang PA. iRhom2 prevents bile duct obstruction induced liver fibrosis. (Submitted).
  • Cheng HW, Onder L, Novkovic M, Soneson C, Lütge M, Pikor N, Scandella E, Robinson MD, Miyazaki JI, Tersteegen A, Sorg U, Pfeffer K, Rülicke T, Hehlgans T, Ludewig B. Origin and differentiation trajectories of fibroblastic reticular cells in the splenic white pulp. Nat Commun. 2019 Apr 15;10(1):1739
  • Ufermann C-M*, Domröse A*, Babel T, Tersteegen A, Cengiz SC, Eller SK, Spekker-Bosker K, Sorg UR, Förster I, Däubener W (*shared first authors). Indoleamine 2,3-dioxygenase activity during acute toxoplasmosis and the suppressed T cell proliferation in mice. Front. Cell. Infect. Microbiol. 2019, 9:184
  • Spekker-Bosker K*, Ufermann C-M*, Maywald M, Zimmermann A, Domröse A, Woite C, Däubener W, Eller SK (*shared first authors) hCMV-Mediated Immune Escape Mechanisms Favor Pathogen Growth and Disturb the Immune Privilege of the Eye. Int. J. Mol. Sci. 2019, 20(4):85
  • Katrin Spekker-Bosker†, Christoph-Martin Ufermann†, Maike Oldenburg, Walter Däubener and Silvia K. Eller; Interplay between IDO1 and iNOS in human retinal pigment epithelial cells, Medical Microbiology and Immunology, 2019, Doi:10.1007/s00430-019-00627-4
  • Sanwald JL, Dobner J, Simons IM, Poschmann G, Stühler K, Üffing A, Hoffmann S, Willbold D. Lack of GABARAP-Type Proteins Is Accompanied by Altered Golgi Morphology and Surfaceome Composition. Int J Mol Sci. 2020 Dec 23;22(1):85. doi: 10.3390/ijms22010085. PMID: 33374830
  • SARS-CoV-2 targets neurons of 3D human brain organoids. Ramani, A.*, Müller, L.*, Ostermann, P.N.*, Gabriel, E., Abida-Islam, P., Müller-Schiffmann, A., Mariappan, A., Goureau O., Gruell, H., Walker A., Andrée, M., Hauka, S., Houwaart, T., Dilthey, A., Wohlgemuth, K., Omran, H., Klein, F., Wieczorek, D., Adams, O., Timm, J., Korth, C., Schaal, H. and Gopalakrishnan, J. (*Joint first authors), "EMBO Journal", 2020
  • Intronic tRNAs of mitochondrial origin regulate constitutive and alternative splicing. Hoser SM, Hoffmann A, Meindl A, Gamper M, Fallmann J, Bernhart SH, Müller L, Ploner M, Misslinger M, Kremser L, Lindner H, Geley S, Schaal H, Stadler PF, Huettenhofer A., Genome Biology, 2020
  • Profiling of cis- and trans-acting factors supporting noncanonical splice site activation. Erkelenz, S., Poschman, G., Ptok, J., Müller, L. and Schaal, H., RNA Biology, 2020
  • Sensitivity of commercial Anti-SARS-CoV-2 serological assays in a high-prevalence setting. Müller, L.*, Ostermann, P.N.*, Walker, A., Wienemann, T., Mertens, A., Adams, O., Andree, M., Hauka, S., Lübke, N., Keitel, V., Drexler, I., Di Cristanziano, V., Hermsen, D.F., Kaiser, R., Boege, F., Klein, F., Schaal, H., Timm, J. and Senff, T. (*Joint first authors), "European Journal of Clinical Microbiology & Infectious Diseases", 2021

Publications of the associated doctoral researchers

  • Hoogeveen R.C., Robidoux M.P., Schwarz T., Heydmann L., Cheney J.A., Kvistad D., Aneja J., Melgaço J.G., Fernandes C.A., Chung R.T., Boonstra A., Kim A.Y., Baumert T.F., Timm J., Lewis-Ximenez L.L., Tonnerre P., Lauer G.M. Phenotype and function of HBV-specific T cells is determined by the targeted epitope in addition to the stage of infection. Gut. 2019 May;68(5):893-904. doi: 10.1136/gutjnl-2018-316644.
  • Anastasiou OE., Widera M., Westhaus S., Timmer L., Korth J., Gerken G., Canbay A., Todt D., Steinmann E., Schwarz T., Timm J., Verheyen J., Ciesek S. Clinical Outcome and Viral Genome Variability of Hepatitis B Virus-Induced Acute Liver Failure. Hepatology. 2019 Mar;69(3):993-1003. doi: 10.1002/hep.30279.
  • Javid A, Cooper C, Singh A, Schindler S, Hänisch M, Marshall RL, Kalscheuer R, Bavro VN, Bhatt A.
    The mycolic acid reductase Rv2509 has distinct structural motifs and is essential for growth in slow-growing mycobacteria. Mol Microbiol. 2020 Feb;113(2):521-533. doi: 10.1111/mmi.14437. Epub 2019 Dec 17.
  • Erkelenz S, Theiss S, Kaisers W, Ptok J, Walotka L, Muller L, et al. Ranking noncanonical 5' splice site usage by genome-wide RNA-seq analysis and splicing reporter assays. Genome Res. 2018; 28(12):1826-40
  • Brillen AL, Walotka L, Hillebrand F, Muller L, Widera M, Theiss S, et al.  Analysis of Competing HIV-1 Splice Donor Sites Uncovers a Tight Cluster of Splicing Regulatory Elements within Exon 2/2b. Journal of virology. 2017; 91(14)
  • Brillen AL, Schoneweis K, Walotka L, Hartmann L, Muller L, Ptok J, et al. Succession of splicing regulatory elements determines cryptic 5ss functionality. Nucleic acids research. 2017; 45(7):4202-16
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